Files added in a project with 'url' are not allowing break points to be hit. This is not a regression as I also see it with 3.5.0.GA.
Steps To Reproduce:
1. create app with code below.
2. Put a breakpoint on any line in newWin.js file.
3. Run the app.
4. Click Test button.
Actual: Breakpoint is not recognized in newWin File.
Expected: Breakpoint must get hit.
See related ticket. Looks like this was fixed for Android in the past and iOS was verified. Possibly broke since then.